NYU Langone Health is a world-class, patient-centered, integrated academic medical center, known for its excellence in clinical care, research, and education. It comprises more than 200 locations throughout the New York area, including five inpatient locations, a children's hospital, three emergency rooms and a level 1 trauma center. Also part of NYU Langone Health is the Laura and Isaac Perlmutter Cancer Center, a National Cancer Institute designated comprehensive cancer center, and NYU Grossman School of Medicine, which since 1841 has trained thousands of physicians and scientists who have helped to shape the course of medical history. At NYU Langone Health, equity, diversity, and inclusion are fundamental values. We strive to be a place where our exceptionally talented faculty, staff, and students of all identities can thrive. We embrace diversity, inclusion, and individual skills, ideas, and knowledge.
Position Summary:
We have an exciting opportunity to join our team as a Senior Analyst - Clinical Ancillary Systems. In this role, the successful Sr. Systems Analyst will review business goals and determine the technical, lab workflow requirements for assigned platform of applications for Molecular Lab. This work will require a detailed understanding of the clinical, education and research workflows at NYU Langone. Perform basic maintenance on laboratory computational equipment. Coordinate all IT hardware or software changes and adhere to MCIT Change Management Control. The Sr. Systems Analyst Genomics/Bioinformatics Analyst works with team members to review IT infrastructure requirements, review security requirements, understand network requirements of a new/ future instruments and determine integration details to NYU's Laboratory Information System (LIS) such as LabVantage and EPIC Beaker.
Job Responsibilities:
- Previous working experience in a clinical cancer diagnosis is a plus.
- Programming skills including scripting in Python, Perl, R, C++, Java, MySQL, NOSQL.
- Thorough understanding of Windows, Citrix, Unix and Linux system management, resource management within cluster configuration management.
- Experience in the hardware selection and implementation for high performing computing.
- Thorough understanding of networks and troubleshooting high performance computing systems.
- Proficiency using next-generation sequencing data analysis tools such as BWA and GATK.
- Familiarity with commonly used algorithms for alignment and variant calling.
- Strong Analytical skills. Excellent communication skills (verbal and written) required. Strong statistical understanding.
- Implement and execute computation analysis of cancer genomes, high-throughput sequencing datasets, genomic profiling datasets and other sequencing and array based analysis.
- Perform other duties as assigned.
Additional Position Specific Responsibilities:
Develop and maintain in-house next-generation sequencing data analysis software and applications. Coordinate with genomic laboratory service technical staff to optimize and validate the NGS softwares and applications. Responsible for the new novel software protocol implementation. Responsible for the integration with external database. Integrate publicly accessible, commercial, or proprietary genomic or post genomic databases. Create and modify web-based and open source bioinformatics tools to support in-house NGS Data analysis. Test new and updated bioinformatics tools and softwares.
Minimum Qualifications:
To qualify you must have a Typically requires 4 or more years of experience and BA/BS degree or equivalent.
Preferred Qualifications:
Must possess excellent computer and networking knowledge. Must be a motivated individual - willing to continually learn new responsibilities. Must possess knowledge of Radiation Oncology, Labs, Patient Transport, Cardiology, Dermpath and glucometers. Exhibit good communication (both written and oral) skills, in order to open tickets and changes, and keep good communications with users. Exhibit the ability to troubleshoot various technical issues in various Ancillary environments, including interfacing with vendor technical support as needed. Maintain professional disposition at all times.
Qualified candidates must be able to effectively communicate with all levels of the organization.
NYU Langone Health is an equal opportunity and affirmative action employer committed to diversity and inclusion in all aspects of recruiting and employment. All qualified individuals are encouraged to apply and will receive consideration without regard to race, color, gender, gender identity or expression, sex, sexual orientation, transgender status, gender dysphoria, national origin, age, religion, disability, military and veteran status, marital or parental status, citizenship status, genetic information or any other factor which cannot lawfully be used as a basis for an employment decision. We require applications to be completed online.
NYU Langone Health provides a salary range to comply with the New York City Law on Salary Transparency in Job Advertisements. The salary range for the role is $73,770.80 - $92,548.00 Annually. Actual salaries depend on a variety of factors, including experience, specialty, education, and hospital need. The salary range or contractual rate listed does not include bonuses/incentive, differential pay or other forms of compensation or benefits.
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